CDS

Accession Number TCMCG016C23995
gbkey CDS
Protein Id OMO58734.1
Location 84383..85564
Organism Corchorus capsularis
locus_tag CCACVL1_25396

Protein

Length 393aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215142; BioSample:SAMN03290679;
db_source AWWV01014156.1
Definition RNA-processing protein, HAT helix [Corchorus capsularis]
Locus_tag CCACVL1_25396

EGGNOG-MAPPER Annotation

COG_category A
Description pre-mRNA-processing factor
KEGG_TC -
KEGG_Module M00354        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko03041        [VIEW IN KEGG]
KEGG_ko ko:K12855        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03040        [VIEW IN KEGG]
map03040        [VIEW IN KEGG]
GOs GO:0000244        [VIEW IN EMBL-EBI]
GO:0000375        [VIEW IN EMBL-EBI]
GO:0000377        [VIEW IN EMBL-EBI]
GO:0000387        [VIEW IN EMBL-EBI]
GO:0000398        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003712        [VIEW IN EMBL-EBI]
GO:0003713        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0005102        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005515        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0005681        [VIEW IN EMBL-EBI]
GO:0005682        [VIEW IN EMBL-EBI]
GO:0005684        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006304        [VIEW IN EMBL-EBI]
GO:0006305        [VIEW IN EMBL-EBI]
GO:0006306        [VIEW IN EMBL-EBI]
GO:0006355        [VIEW IN EMBL-EBI]
GO:0006357        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006397        [VIEW IN EMBL-EBI]
GO:0006403        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0008134        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008380        [VIEW IN EMBL-EBI]
GO:0009266        [VIEW IN EMBL-EBI]
GO:0009409        [VIEW IN EMBL-EBI]
GO:0009628        [VIEW IN EMBL-EBI]
GO:0009791        [VIEW IN EMBL-EBI]
GO:0009845        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009891        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009893        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010557        [VIEW IN EMBL-EBI]
GO:0010604        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010628        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0015030        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0016458        [VIEW IN EMBL-EBI]
GO:0016604        [VIEW IN EMBL-EBI]
GO:0016607        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0022607        [VIEW IN EMBL-EBI]
GO:0022613        [VIEW IN EMBL-EBI]
GO:0022618        [VIEW IN EMBL-EBI]
GO:0030532        [VIEW IN EMBL-EBI]
GO:0031047        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031325        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031328        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032259        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033036        [VIEW IN EMBL-EBI]
GO:0034622        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0035257        [VIEW IN EMBL-EBI]
GO:0035258        [VIEW IN EMBL-EBI]
GO:0043021        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0043414        [VIEW IN EMBL-EBI]
GO:0043933        [VIEW IN EMBL-EBI]
GO:0044085        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044451        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0044728        [VIEW IN EMBL-EBI]
GO:0044877        [VIEW IN EMBL-EBI]
GO:0045893        [VIEW IN EMBL-EBI]
GO:0045935        [VIEW IN EMBL-EBI]
GO:0045944        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0046540        [VIEW IN EMBL-EBI]
GO:0048518        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048522        [VIEW IN EMBL-EBI]
GO:0048583        [VIEW IN EMBL-EBI]
GO:0048584        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0050681        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051173        [VIEW IN EMBL-EBI]
GO:0051179        [VIEW IN EMBL-EBI]
GO:0051252        [VIEW IN EMBL-EBI]
GO:0051254        [VIEW IN EMBL-EBI]
GO:0051427        [VIEW IN EMBL-EBI]
GO:0060147        [VIEW IN EMBL-EBI]
GO:0060148        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0060964        [VIEW IN EMBL-EBI]
GO:0060966        [VIEW IN EMBL-EBI]
GO:0060968        [VIEW IN EMBL-EBI]
GO:0065003        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070920        [VIEW IN EMBL-EBI]
GO:0071005        [VIEW IN EMBL-EBI]
GO:0071011        [VIEW IN EMBL-EBI]
GO:0071013        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071826        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0080188        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090351        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0097525        [VIEW IN EMBL-EBI]
GO:0097526        [VIEW IN EMBL-EBI]
GO:0120114        [VIEW IN EMBL-EBI]
GO:0140110        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1902494        [VIEW IN EMBL-EBI]
GO:1902680        [VIEW IN EMBL-EBI]
GO:1903506        [VIEW IN EMBL-EBI]
GO:1903508        [VIEW IN EMBL-EBI]
GO:1903798        [VIEW IN EMBL-EBI]
GO:1903800        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]
GO:2000628        [VIEW IN EMBL-EBI]
GO:2000630        [VIEW IN EMBL-EBI]
GO:2000634        [VIEW IN EMBL-EBI]
GO:2000636        [VIEW IN EMBL-EBI]
GO:2000637        [VIEW IN EMBL-EBI]
GO:2001141        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGAAGTAGGGGAAGCAAAACGCCTCAGACTGAGGGTTGCATTGGATATGGCAGGAAAAAAGCTTTCGGGATTAACGGCGGCCGTTGATCCCGAAACCTATTTGAGGGATCTTGCTGCAATCAAGAATCGCACGGATGAAGACATTTCCAACATCAAGCAAGCTCGAATGGTTCTGAAAGCTGTTACCCGCAGAAATCCCCGAGTAGCCTCTGGTTGGATTTCTTTAGCCAGATTCGAGGAACTTACAGGGGATATGGAGGCTGCTAGGCGCGTGATAGAGAAAGGGTGTCAGAATTGCCCAAAGAACCAAGATTTGTGGCTGGAGGGTTCAAGACTTGCAGGGCCGGATGAGAGGAAGATGAAAGCCATGATCGTAAGGGCGCTGAAGGCCATACCCAATTCATCAAGACTGATGTTGGAGAGTGATGTTTTGCAAAAAAGCAGGGTTTTAAGAAGGGGAATAGAGAATATTCCAAATTCTGTTATCTTATGGAAGGCGCTGATTGACATGGTAGATGAGGACAATATCGAAGTTGCAGTGTTATTACTCAACAAGGCAGTTGAGTGCTGTCCTACTCATGCCGACTTTTGGCTGGCATTGGCCAGATTGTTGCCACTTAAAGAAGCTAGGGAAGCCCTTGAAAGGGCAAGGCAACAGCTACCGGGGGAGTCTGCCATCGTGATCGCCCAAGCAAGGTTGGAGGAGGCTGGTGGCGGTGCTGACCGTGACCTTGTTGTCGGCAACATAATTGAGGGTTTTATCAGGGAATTGGAAAGACAAGGGCTGTATATTGATAGAAGGGCGTGGATGGAGAAAGCCGAGGTTGCCGAGAGGCTTGGCTGTGCAGTTACGTGCCAGGCTATAATCAGGAACACCATAGGGATTGGGATGGGTCGTGATGTTGAAGTGAGTGTTAGGAAGCTCACTTGGATAGCTGAGGCCAGGGAATTGACACTGCGGGGTTCGTTGGTCACTGCGCGAGCCACCTATGCCTACACTCTTTCAGTGTTTTACTCAGATACTCACATTTGGAAAATAGCTGAAGAATTTGAGTTCACATATGGGTTTGACATATCCATTCGTAGGCTCCACCATGCCCGATTGGCATCGCTTGCTTGGAGAATCGGCGAGGCTCGAGGGATTCTTGCAACCATCTGCTCTCCTCCATTATGGGTATGA
Protein:  
MEVGEAKRLRLRVALDMAGKKLSGLTAAVDPETYLRDLAAIKNRTDEDISNIKQARMVLKAVTRRNPRVASGWISLARFEELTGDMEAARRVIEKGCQNCPKNQDLWLEGSRLAGPDERKMKAMIVRALKAIPNSSRLMLESDVLQKSRVLRRGIENIPNSVILWKALIDMVDEDNIEVAVLLLNKAVECCPTHADFWLALARLLPLKEAREALERARQQLPGESAIVIAQARLEEAGGGADRDLVVGNIIEGFIRELERQGLYIDRRAWMEKAEVAERLGCAVTCQAIIRNTIGIGMGRDVEVSVRKLTWIAEARELTLRGSLVTARATYAYTLSVFYSDTHIWKIAEEFEFTYGFDISIRRLHHARLASLAWRIGEARGILATICSPPLWV